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These seqwish-* directories are temporary working files created by seqwish during graph construction runs. They were accidentally committed and are bloating the repository. Removed: - 36 files across 12 seqwish-* directories (~10MB total) - Files: .sqa, .sqi, .sqq (seqwish's intermediate sequence alignment data) Added to .gitignore: - seqwish-*/ pattern to prevent future commits - wfmash-*/ pattern (similar temp directories) These temporary directories are automatically created by seqwish and should never be tracked in version control.
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Problem
The repository contains 12
seqwish-*temporary directories that were accidentally committed. These are working directories created by seqwish during graph construction and should never be tracked in version control.Impact
.sqa,.sqi,.sqq(seqwish's intermediate sequence alignment data)Changes
Removed directories:
Updated .gitignore:
seqwish-*/patternwfmash-*/pattern (similar temp directories)Notes
seqwish-local/(actual submodule, not a temp directory)Verification
✅ Tests pass
✅ Build successful