v0.9.11

Enhancements

• Added factor_level_method argument to df_explicit_na() to control factor level ordering
  when converting character or logical columns. Supported methods: "sort_auto" (default,
  locale-aware, preserves original behavior), "sort_radix" (byte-order / ASCII sort), and
  "data" (first-appearance order). (#1322)
• Added factor_as_factor argument to df_explicit_na() to allow re-encoding of existing
  factor columns using factor_level_method. Defaults to FALSE to preserve original behavior.
• Added factor_level_last_pattern argument to df_explicit_na() to move factor levels
  matching a regular expression to the end (before na_level).
• Added alternative argument to s_coxph_pairwise() to allow one-sided hypothesis testing.
• Added lr_stat_df to the parameters return list of s_coxph_pairwise().
• Added uncond_exact_diff method to estimate_proportion_diff() for the unconditional exact confidence interval for the difference in proportions by inverting one-sided tail tests over a nuisance parameter.
• Added cmh_sato method to test_proportion_diff() for CMH testing with the Sato variance estimator. (#1482)
• Added range_with_cens_info statistic to s_surv_time().
• Added lsmean_se, lsmean_ci, and lsmean_diffci statistics to s_ancova().
• Added s_ancova() to exported functions.
• In estimate_proportion_diff now also the standard error is available for selected methods in the se_diff statistic.
• Exported h_incidence_rate() to allow to reuse the incidence rate estimation logic.
• Exported prop_chisq(), prop_cmh(), prop_fisher(), and prop_schouten() for standalone proportion difference testing.
• Added digits argument to h_tbl_median_surv() and control_surv_med_annot() to control the signif() precision of the median survival time and confidence interval values annotated in g_km(). (#1469)

Bug Fixes

• Fixed bug in prop_diff_cmh() which previously failed when strata combinations had 0 observations.
• Fixed one-sided p-values in prop_cmh() with Wilson-Hilferty transformation — the sign of the effect was lost, producing incorrect p-values for alternative = "less" and alternative = "greater".

Miscellaneous

• Relaxed fit_logistic() tests to compare only the formula right-hand side, so they no longer break when survival::clogit() changes the internally generated response term. (#1484)
• Updated roxygen2 to 8.0.0 and added @exportS3Method tags for S3 methods in decorate_grob.R and utils_grid.R.
• Converted s_surv_time() to exported functions.

What's Changed

• correct TMAX by @Shaakon35 in #1460
• Update email for Abinaya Yogasekaram by @shajoezhu in #1461
• Change email for Jana Stoilova by @shajoezhu in #1463
• Update dependencies in DESCRIPTION file by @shajoezhu in #1464
• Update Adrian Waddell's email address by @shajoezhu in #1465
• Update roxygen2 to 8.0.0 and add @exportS3Method tags by @Melkiades in #1477
• Add additional lr_stat_df statistic by @munoztd0 in #1474
• 1475: Add unconditional exact CI for proportion differences by @danielinteractive in #1476
• 1478: fix prop_diff_cmh() check by @danielinteractive in #1479
• Kaplan meier; Added range_with_cens_info statistic to s_surv_time() by @munoztd0 in #1481
• Add lsmean_se/lsmean_ci/lsmean_diffci stats, weights_emmeans param, by @munoztd0 in #1480
• 1482: Add CMH test with Sato variance estimator by @danielinteractive in #1483
• Compare only formula RHS in fit_logistic() tests by @Melkiades in #1485
• Exported h_incidence_rate() by @munoztd0 in #1488
• Clean up (re-document, fix linters, update old magritr to native pipe) by @munoztd0 in #1489
• feat: add factor_level_method, factor_as_factor, factor_level_last_pattern to df_explicit_na by @kaipingyang in #1487
• Update survival package version in DESCRIPTION by @shajoezhu in #1496
• 1490: additional stats by @danielinteractive in #1491
• Expose digits argument for h_tbl_median_surv by @shajoezhu with @Copilot in #1469
• Cran v0.9.11 by @shajoezhu in #1497

New Contributors

• @Shaakon35 made their first contribution in #1460
• @munoztd0 made their first contribution in #1474
• @kaipingyang made their first contribution in #1487
• @shajoezhu with @Copilot made their first contribution in #1469

Full Changelog: v0.9.10...v0.9.11