Release v0.9.7 cran · pharmaverse/tern

Added the denom parameter to s_count_cumulative(), s_count_missed_doses(), and s_count_occurrences_by_grade().
Added "N_row" as an optional input to denom in s_count_occurrences().
Added rel_height_plot parameter to g_lineplot() to control the line plot height relative to annotation table height.
Added as_list parameter to g_lineplot() to allow users to return the line plot and annotation table elements as a list instead of stacked for more complex customization.
Added vignette "Understanding tern functions" for future reference.
Added to analyze_vars() statistical names that are used by rtables::as_result_df().
Added the possibility to integrate custom statistical functions to default ones in analyze_vars().
Refactored analyze_vars() and a_summary() to take all options from ?rtables::additional_fun_params.
Refactored summarize_change() and count_values() to work without make_afun().
Refactored a_count_occurrences_by_grade(), a_count_patients_with_event(), and a_count_patients_with_flags() to no longer use make_afun().
Refactored get_labels_from_stats() to use a named list of levels for each statistic instead of row names.
Updated the table_font_size parameter of g_lineplot() to control the size of all text in the annotation table, including labels.
Merged compare_vars() into analyze_vars() as overlap was significant.

Fixed bug in a_summary() causing non-unique row_name values to occur when multiple statistics are selected for count variables.

Reverted deprecation of quick get functions summary_formats() and summary_labels(). Added disclaimer about underlying use of get_stats.
Corrected handling of extra arguments and NA for summarize_change().
Removed count_fraction_fixed_dp exception by assigning it to the result of count_fraction with a different format output.

What's Changed

1315 var labels odds ratio@main by @ayogasekaram in #1317
Update NEST site URLs by @edelarua in #1319
Add method argument to s_odds_ratio() and estimate_odds_ratio() by @edelarua in #1320
Update DESCRIPTION by @shajoezhu in #1321
Fix bug in a_summary() causing nonunique row_name values by @edelarua in #1323
Pkgdown site improvements by @edelarua in #1328
List options in .stats argument descriptions by @edelarua in #1330
Adds denom argument to count s_* functions by @edelarua in #1326
Move nestcolor to imports by @edelarua in #1339
import nestcolor by @shajoezhu in #1341
close #1340, rm staged dep by @shajoezhu in #1344
Add table formatting options to g_lineplot() - table relative height & font size by @edelarua in #1335
Refactor count_patients_with_event() and count_patients_with_flags() by @edelarua in #1343
Fix indent modifier bug in count_patients_with_flags() by @edelarua in #1350
Refactor summarize_change() by @Melkiades in #1347
1301 feature request add confidence intervals for quantiles in surv time by @iaugusty in #1306
adding offset to nb by @shajoezhu in #1358
Test coxph by @shajoezhu in #1365
Refactoring of analyze_vars with specifics for .stat_names by @Melkiades in #1361
Refactor a_count_values() by @edelarua in #1374
vbump to 0.9.7, prep for release [skip vbump] by @shajoezhu in #1372

Full Changelog: v0.9.6...v0.9.7