0.4.0
- docs: add example for Box/Violin plot for CellStatPlot
- chore(CellStatPlot): default 'ident' of to the active.ident of given object
- chore: remove references to PrepareEnrichrResult from NAMESPACE, reexports, and documentation (plotthis v0.7)
- docs: fix links for venn and upset plot references in ClonalResidencyPlot documentation
- chore: rename clonalstatplot.R to clonalcompositionplot.R
- refactor: rename 'select' to 'sel' in clone selection functions and documentation
- feat: deprecate ClonalDynamicsPLot in favor of ClonalStatPlot
- BREAKING: change clone selectors: larger to gt and ge; smaller to lt and le; add ne
- feat: add ClonalStatPlot function for visualizing clone statistics
- fix: fix empty groupings for merge_clonal_groupings
- docs: correct VignetteIndexEntry title in Visualizing_data_with_LLMs
- feat: add plots spatial data (wip)
- chore: add terra package to DESCRIPTION
- feat(spatial): add Spatial.Seurat.SlideSeq
- enh(FeatureStatPlot): allow ident to be NULL so that Idents() is used
- feat(SpatPlot): add spatial plots for Xenium data by Giotto
- chore: fix checks
- ci: add GiottoClass to extra-packages for R dependencies
- ci: use R 4.4.1 (required by GiottoClass)
- doc: finish vignettes for xenium data with giotto
- feat: add spatial utilities for plotting in Seurat and Giotto
- doc(spatial): finish documentation for spatial plots
- doc: add CODEX examples for spatial plots
- doc: add vignettes for scplotter with Giotto seqFISH and vizgen data
- chore: bump version to 0.4.0
- doc: enhance documentation for SpatFeaturePlot and SpatDimPlot with additional resource links for examples
Full Changelog: 0.3.0...0.4.0