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0.7.5

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@pwwang pwwang released this 01 Jul 07:50
· 47 commits to master since this release
0.7.5
a9780ea
  • fix(DESCRIPTION): specify exact version for drieslab/GiottoClass dependency
  • fix(DESCRIPTION): update GiottoClass and GiottoUtils dependency versions
  • fix(DESCRIPTION): update GiottoClass dependency to use the latest version without a specific commit
  • ci: update GiottoClass dependency to version 0.4.7
  • ci: update GiottoClass dependency to version R4.4.0
  • chore(DESCRIPTION): specify exact version for drieslab/GiottoClass dependency
  • docs: add documentation section with link to online resources [skip ci]
  • fix: enhance gene selection logic in MarkersPlot function for heatmap and dot plots
  • fix(CCCPlot): fix rows_split_by and columns_split_by for heatmp with method = 'interaction'
  • docs: update LLM provider model and API endpoint in Visualizing_data_with_LLMs vignette
  • docs: update example in FeatureStatPlot documentation to include row annotation palette
  • fix: enhance handling of heatmap and dot plot types in FeatureStatPlot function
  • fix(FeatureStatPlot): hide column names for heatmap with cell_type bars
  • refactor(do_call): use do_call from plotthis
  • feat: add linkedheatmap plot type to CCCPlot function with new parameters for ligand and receptor expressions
  • docs(CCCPlot): enhance CCCPlot documentation: Update title, arguments, and descriptions for clarity and detail. Improve data format and method sections, and refine examples for better usability.
  • docs(CellDimPlot/CellVelocityPlot): enhance documentation for CellDimPlot and CellVelocityPlot functions
  • docs(CellStatPlot): enhance CellStatPlot documentation and argument descriptions
  • docs(SCPlotterChat): enhance documentation for LLM-powered chat interface, including detailed descriptions of architecture, conversation history, tool registry, and LLM provider setup
  • docs: update documentation for Clonal Composition, Length, Overlap, Residency, and Volume plots
  • docs: enhance ClonalDiversityPlot and ClonalRarefactionPlot documentation for clarity and detail
  • docs(ClonalGeneUsagePlot): enhance documentation for clarity and detail, including usage examples and parameter descriptions
  • docs: update documentation for ClonalKmerPlot and ClonalPositionalPlot
  • docs: enhance ClonalStatPlot documentation with detailed arguments and usage examples
  • docs: enhance documentation for clonal data processing functions, improving clarity and detail
  • docs: enhance ClustreePlot documentation for clarity and detail, including usage examples and parameter descriptions
  • docs: enhance EnrichmentPlot documentation for clarity and detail, including comprehensive parameter descriptions and usage examples
  • docs: enhance FeatureStatPlot documentation and internal dispatcher
  • docs: enhance MarkersPlot documentation for clarity and detail
  • docs: enhance documentation for spatial plot functions in Seurat and Giotto
  • docs: update documentation links and examples for clarity and consistency across multiple plot functions

Full Changelog: 0.7.4...0.7.5

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