seq and convert

Prototype of a CLI program to convert between different single cell RNA-seq-related formats. Both between "simply a matrix" formats like mtx (MM), csv etc, but the vision is also between file types for different scRNA-seq toolkits: Seurat (SeuratH5, Rdata), scanpy (h5ad), loom, zarr etc.

Vision is for usage in the style of:

╭─> ~/code/seq_and_convert
╰─ saq data/GSE164073_raw_counts_GRCh38.p13_NCBI.tsv -d output --from tsv --to mtx

This could then be used directly or utilised by toolkits, pipelines etc.

Quick demo of the package:

(The working title for the tool is loosely based, I guess, on Seek and Destroy by Metallica. No guarantees for keeping it.)