version 3.1.0

2024.11.24: version 3.1.0

• Updated jaxlib to 0.3.7 in the scvi-scgen-scmomat-unitvelo environment to fix an installation issue (#13)
• Added doubletdetection in the scvi-scgen-scmomat-unitvelo environment
• Fixed an installation issue of velocyto-R
• Added GEMLI
• Added DIRECT-NET
• Added scplotter
• Added parallel-fastq-dump
• Updated rapids_singlecell from 0.10.2 to 0.10.10
• Updated SRA Toolkit from 3.0.10 to v3.1.1
• Removed MeSH.Hsa.eg.db because it is not available for Bioconductor version '3.18'

2024.5.22: version 3.0.0

• Changed Python environment from conda to micromamba (/opt/micromamba)
• Added glmGamPoi for faster computation.
• Created different flavors of ShortCake to improve usability.
• Added cell2fate
• Added BANKSY
• Removed monet