ce-datascience: v4.1.0

4.1.0 (2026-10-16)

Features

• hooks: close data-boundary limits with a safe runner, identifier index, and aggregate reads (2ae9fe0)
• reporting: add SPIRIT 2025 and PRISMA-P protocol checklists (1115d1e)
• reporting: add TRIPOD-LLM, DECIDE-AI and MI-CLAIM checklists (61b39eb)
• setup: ask for a sensitive-data boundary and enforce schema-only mode (f575c81)

Bug Fixes

• checklist-match: never commit or ask users to commit guideline source documents (54a3284)
• checklists: always route to the newest guideline version (a142525)
• checklists: close unverified items from official DEAL, CENT, PRISMA-ScR and QUADAS-3 documents (0ca57b4)
• checklists: never present a superseded guideline version as current (e560571)
• checklists: verify all reporting checklists against EQUATOR and primary sources (ca77c5c)
• consort-nof1-checklist: add CENT abstract guidance from the statement's Table 2 (f52f39e)
• coreq-checklist: record verification against the original COREQ article (40d4084)
• deal-checklist: record pathways and sections confirmed by the DEAL main article (e865f41)
• deal-checklist: transcribe DEAL-A and DEAL-B items from Supplementary Table 2 and mark DEAL verified (12afa41)
• gramms-checklist: correct the update-protocol cross-check and record GRAMMS 2.0 status (10db37c)
• gramms-checklist: record the BMJ Global Health supplement copy as secondary corroboration (e0a0b70)
• guideline-registry: drop superseded TRIPOD 2015 and QUADAS-2 and resolve old names to successors (4e485ae)
• hooks: treat data piped or redirected into a network tool as an upload (c28cbc8)
• phenotype-validate: correct estimability guidance and add eval case (7d69f53)
• phenotype-validate: reweight Se/Sp for algorithm-stratified chart review (fb2dc60)
• prisma-scr-checklist: confirm items 12 and 16 as the optional items from the Tricco 2018 manuscript (3bfb3e7)
• prisma-scr-checklist: record what the official checklist confirms about optional items (db87f6c)
• quadas-3-checklist: use official signalling-question numbering from the QUADAS-3 E&E (d86223f)
• reporting: rebuild TARGET checklist and supersede TRIPOD 2015 (ec4a0ab)
• review: correct calibration, causal-inference and multiplicity reviewers (535677a)
• review: correct methods, leakage, fairness and checklist reviewers (1e763ca)
• schema-peek: never print a first row of personal names as headings (ceb1d18)
• skills: correct verify, genome-build and pubmed guidance; guard sprint signoff and review scope (83ccd07)
• skills: tighten skill and agent descriptions for routing (e10c0c3)
• stats: correct checklist routing, omics batch, CLIF IPTW and pipeline reviewers (9739975)
• stats: correct effect reporting, method extraction and evidence mapping (09a44c4)
• stats: correct missing-data, calibration-figure, model-card and GEE guidance (900092c)
• stats: correct power, effect-size and trial-design methods (f020d61)
• stats: correct preregistration rules and Table 1 design rules (0bed951)
• stats: correct SAP tables, cohort build, research-question and workflow methods (2c468fd)
• stats: require ICH E9(R1) estimands in the SAP and SAP template (15dca83)