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Releases: sajor2000/methodsmith
Releases · sajor2000/methodsmith
Release list
methodsmith: v5.1.1
methodsmith: v5.1.0
5.1.0 (2026-10-19)
Features
- clif-meta: add formal aggregate synthesis workflows (#111) (9e40c82)
- evals: add run tooling, structural code_query gates, and ML decision sidecar (#116) (df37c8c)
- model-choice: add ML prediction training protocol (#114) (ea7134c)
- review: add CONSORT-Outcomes and SPIRIT-Outcomes 2022 checklists (df53c42)
- review: add CONSORT-Outcomes and SPIRIT-Outcomes 2022 checklists (59124c7), closes #121
- review: add RoB 2, ROBINS-I, PROBAST+AI, and AMSTAR 2 appraisal checklists (d3f6935)
- review: add RoB 2, ROBINS-I, PROBAST+AI, and AMSTAR 2 appraisal checklists (3ddea99)
- review: add TIDieR, RIGHT, SRQR, and PRISMA-S reporting checklists (bc53799)
- review: add TIDieR, RIGHT, SRQR, and PRISMA-S reporting checklists (507c7aa), closes #120
Bug Fixes
- data-boundary: stop DOI tails and percent-encoding from hiding identifiers (b46f84f)
- data-boundary: stop DOI tails and percent-encoding from hiding identifiers (85ca9b8)
- repo: close public-release gaps before publishing (3e54442)
- repo: close public-release gaps before publishing (ec257a3)
- review: strengthen scientific integrity gates (#113) (73cbef7)
- website: polish landing page and installation guidance (#117) (b0dea55)
cli: v5.1.1
cli: v5.1.0
5.1.0 (2026-10-19)
Features
- clif-meta: add formal aggregate synthesis workflows (#111) (9e40c82)
- evals: add run tooling, structural code_query gates, and ML decision sidecar (#116) (df37c8c)
- model-choice: add ML prediction training protocol (#114) (ea7134c)
- review: add CONSORT-Outcomes and SPIRIT-Outcomes 2022 checklists (df53c42)
- review: add CONSORT-Outcomes and SPIRIT-Outcomes 2022 checklists (59124c7), closes #121
- review: add RoB 2, ROBINS-I, PROBAST+AI, and AMSTAR 2 appraisal checklists (d3f6935)
- review: add RoB 2, ROBINS-I, PROBAST+AI, and AMSTAR 2 appraisal checklists (3ddea99)
- review: add TIDieR, RIGHT, SRQR, and PRISMA-S reporting checklists (bc53799)
- review: add TIDieR, RIGHT, SRQR, and PRISMA-S reporting checklists (507c7aa), closes #120
- site: add the 90-second researcher tour video (#118) (4ceebf4)
Bug Fixes
- data-boundary: stop DOI tails and percent-encoding from hiding identifiers (b46f84f)
- data-boundary: stop DOI tails and percent-encoding from hiding identifiers (85ca9b8)
- repo: close public-release gaps before publishing (3e54442)
- repo: close public-release gaps before publishing (ec257a3)
- review: strengthen scientific integrity gates (#113) (73cbef7)
- website: polish landing page and installation guidance (#117) (b0dea55)
methodsmith: v5.0.0
5.0.0 (2026-10-16)
⚠ BREAKING CHANGES
- rebrand: apply the Methodsmith rename (generated by scripts/rebrand/rename.ts)
Features
- brand: Methodsmith brand kit, media and docs presentation (0435f5a)
- brand: rebuild the brand kit around the hallmark mark (1d52fd7)
- manifests: give every manifest the Methodsmith identity (34b0242)
- method-update: detect a ce-datascience install and print the switch (d5117b5)
- plugin: add directory listing icon, logo and screenshot (5ddc21e)
- rebrand: apply the Methodsmith rename (generated by scripts/rebrand/rename.ts) (73e5a37)
Bug Fixes
marketplace: v1.0.0
cursor-marketplace: v1.0.0
cli: v5.0.0
5.0.0 (2026-10-16)
⚠ BREAKING CHANGES
- rebrand: apply the Methodsmith rename (generated by scripts/rebrand/rename.ts)
Features
- brand: Methodsmith brand kit, media and docs presentation (0435f5a)
- manifests: give every manifest the Methodsmith identity (34b0242)
- method-update: detect a ce-datascience install and print the switch (d5117b5)
- numbers: add a traceable number registry and fail-closed manuscript gate (8469820)
- numbers: lock Table 1, figures, SAP outputs and manuscripts to the registry (fb9ddf0)
- numbers: render and check registry numbers in Word manuscripts (009fff7)
- rebrand: add idempotent ce-datascience -> Methodsmith rename tooling (b8b76ca)
- rebrand: apply the Methodsmith rename (generated by scripts/rebrand/rename.ts) (73e5a37)
Bug Fixes
cli: v4.1.0
4.1.0 (2026-10-16)
Features
- hooks: close data-boundary limits with a safe runner, identifier index, and aggregate reads (2ae9fe0)
- reporting: add SPIRIT 2025 and PRISMA-P protocol checklists (1115d1e)
- reporting: add TRIPOD-LLM, DECIDE-AI and MI-CLAIM checklists (61b39eb)
- setup: ask for a sensitive-data boundary and enforce schema-only mode (f575c81)
Bug Fixes
- checklist-match: never commit or ask users to commit guideline source documents (54a3284)
- checklists: always route to the newest guideline version (a142525)
- checklists: close unverified items from official DEAL, CENT, PRISMA-ScR and QUADAS-3 documents (0ca57b4)
- checklists: verify all reporting checklists against EQUATOR and primary sources (ca77c5c)
- deal-checklist: record pathways and sections confirmed by the DEAL main article (e865f41)
- deal-checklist: transcribe DEAL-A and DEAL-B items from Supplementary Table 2 and mark DEAL verified (12afa41)
- guideline-registry: drop superseded TRIPOD 2015 and QUADAS-2 and resolve old names to successors (4e485ae)
- hooks: treat data piped or redirected into a network tool as an upload (c28cbc8)
- phenotype-validate: correct estimability guidance and add eval case (7d69f53)
- phenotype-validate: reweight Se/Sp for algorithm-stratified chart review (fb2dc60)
- reporting: rebuild TARGET checklist and supersede TRIPOD 2015 (ec4a0ab)
- review: correct calibration, causal-inference and multiplicity reviewers (535677a)
- review: correct methods, leakage, fairness and checklist reviewers (1e763ca)
- schema-peek: never print a first row of personal names as headings (ceb1d18)
- skills: correct verify, genome-build and pubmed guidance; guard sprint signoff and review scope (83ccd07)
- skills: tighten skill and agent descriptions for routing (e10c0c3)
- stats: correct checklist routing, omics batch, CLIF IPTW and pipeline reviewers (9739975)
- stats: correct effect reporting, method extraction and evidence mapping (09a44c4)
- stats: correct missing-data, calibration-figure, model-card and GEE guidance (900092c)
- stats: correct power, effect-size and trial-design methods (f020d61)
- stats: correct preregistration rules and Table 1 design rules (0bed951)
- stats: correct SAP tables, cohort build, research-question and workflow methods (2c468fd)
- stats: require ICH E9(R1) estimands in the SAP and SAP template (15dca83)
ce-datascience: v4.1.0
4.1.0 (2026-10-16)
Features
- hooks: close data-boundary limits with a safe runner, identifier index, and aggregate reads (2ae9fe0)
- reporting: add SPIRIT 2025 and PRISMA-P protocol checklists (1115d1e)
- reporting: add TRIPOD-LLM, DECIDE-AI and MI-CLAIM checklists (61b39eb)
- setup: ask for a sensitive-data boundary and enforce schema-only mode (f575c81)
Bug Fixes
- checklist-match: never commit or ask users to commit guideline source documents (54a3284)
- checklists: always route to the newest guideline version (a142525)
- checklists: close unverified items from official DEAL, CENT, PRISMA-ScR and QUADAS-3 documents (0ca57b4)
- checklists: never present a superseded guideline version as current (e560571)
- checklists: verify all reporting checklists against EQUATOR and primary sources (ca77c5c)
- consort-nof1-checklist: add CENT abstract guidance from the statement's Table 2 (f52f39e)
- coreq-checklist: record verification against the original COREQ article (40d4084)
- deal-checklist: record pathways and sections confirmed by the DEAL main article (e865f41)
- deal-checklist: transcribe DEAL-A and DEAL-B items from Supplementary Table 2 and mark DEAL verified (12afa41)
- gramms-checklist: correct the update-protocol cross-check and record GRAMMS 2.0 status (10db37c)
- gramms-checklist: record the BMJ Global Health supplement copy as secondary corroboration (e0a0b70)
- guideline-registry: drop superseded TRIPOD 2015 and QUADAS-2 and resolve old names to successors (4e485ae)
- hooks: treat data piped or redirected into a network tool as an upload (c28cbc8)
- phenotype-validate: correct estimability guidance and add eval case (7d69f53)
- phenotype-validate: reweight Se/Sp for algorithm-stratified chart review (fb2dc60)
- prisma-scr-checklist: confirm items 12 and 16 as the optional items from the Tricco 2018 manuscript (3bfb3e7)
- prisma-scr-checklist: record what the official checklist confirms about optional items (db87f6c)
- quadas-3-checklist: use official signalling-question numbering from the QUADAS-3 E&E (d86223f)
- reporting: rebuild TARGET checklist and supersede TRIPOD 2015 (ec4a0ab)
- review: correct calibration, causal-inference and multiplicity reviewers (535677a)
- review: correct methods, leakage, fairness and checklist reviewers (1e763ca)
- schema-peek: never print a first row of personal names as headings (ceb1d18)
- skills: correct verify, genome-build and pubmed guidance; guard sprint signoff and review scope (83ccd07)
- skills: tighten skill and agent descriptions for routing (e10c0c3)
- stats: correct checklist routing, omics batch, CLIF IPTW and pipeline reviewers (9739975)
- stats: correct effect reporting, method extraction and evidence mapping (09a44c4)
- stats: correct missing-data, calibration-figure, model-card and GEE guidance (900092c)
- stats: correct power, effect-size and trial-design methods (f020d61)
- stats: correct preregistration rules and Table 1 design rules (0bed951)
- stats: correct SAP tables, cohort build, research-question and workflow methods (2c468fd)
- stats: require ICH E9(R1) estimands in the SAP and SAP template (15dca83)