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cli: v4.1.0

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@github-actions github-actions released this 16 Oct 03:02
cli-v4.1.0
9a0c265
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Learn about vigilant mode.

4.1.0 (2026-10-16)

Features

  • hooks: close data-boundary limits with a safe runner, identifier index, and aggregate reads (2ae9fe0)
  • reporting: add SPIRIT 2025 and PRISMA-P protocol checklists (1115d1e)
  • reporting: add TRIPOD-LLM, DECIDE-AI and MI-CLAIM checklists (61b39eb)
  • setup: ask for a sensitive-data boundary and enforce schema-only mode (f575c81)

Bug Fixes

  • checklist-match: never commit or ask users to commit guideline source documents (54a3284)
  • checklists: always route to the newest guideline version (a142525)
  • checklists: close unverified items from official DEAL, CENT, PRISMA-ScR and QUADAS-3 documents (0ca57b4)
  • checklists: verify all reporting checklists against EQUATOR and primary sources (ca77c5c)
  • deal-checklist: record pathways and sections confirmed by the DEAL main article (e865f41)
  • deal-checklist: transcribe DEAL-A and DEAL-B items from Supplementary Table 2 and mark DEAL verified (12afa41)
  • guideline-registry: drop superseded TRIPOD 2015 and QUADAS-2 and resolve old names to successors (4e485ae)
  • hooks: treat data piped or redirected into a network tool as an upload (c28cbc8)
  • phenotype-validate: correct estimability guidance and add eval case (7d69f53)
  • phenotype-validate: reweight Se/Sp for algorithm-stratified chart review (fb2dc60)
  • reporting: rebuild TARGET checklist and supersede TRIPOD 2015 (ec4a0ab)
  • review: correct calibration, causal-inference and multiplicity reviewers (535677a)
  • review: correct methods, leakage, fairness and checklist reviewers (1e763ca)
  • schema-peek: never print a first row of personal names as headings (ceb1d18)
  • skills: correct verify, genome-build and pubmed guidance; guard sprint signoff and review scope (83ccd07)
  • skills: tighten skill and agent descriptions for routing (e10c0c3)
  • stats: correct checklist routing, omics batch, CLIF IPTW and pipeline reviewers (9739975)
  • stats: correct effect reporting, method extraction and evidence mapping (09a44c4)
  • stats: correct missing-data, calibration-figure, model-card and GEE guidance (900092c)
  • stats: correct power, effect-size and trial-design methods (f020d61)
  • stats: correct preregistration rules and Table 1 design rules (0bed951)
  • stats: correct SAP tables, cohort build, research-question and workflow methods (2c468fd)
  • stats: require ICH E9(R1) estimands in the SAP and SAP template (15dca83)
Assets 2
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