Skip to content

Fix Windows trio-dnm3 tests.#2512

Merged
pd3 merged 1 commit intosamtools:developfrom
jkbonfield:trio-HTSDIR
Mar 19, 2026
Merged

Fix Windows trio-dnm3 tests.#2512
pd3 merged 1 commit intosamtools:developfrom
jkbonfield:trio-HTSDIR

Conversation

@jkbonfield
Copy link
Contributor

These fail because the test script has a cd within it, but for the plugins to work on Windows we need PATH to include the plugin directory, which gets copied from $HTSDIR. Unfortunately if our htslib directory is specified as a relative path then the cd breaks this.

These fail because the test script has a cd within it, but for the
plugins to work on Windows we need PATH to include the plugin
directory, which gets copied from $HTSDIR.  Unfortunately if our
htslib directory is specified as a relative path then the cd breaks
this.
@pd3 pd3 merged commit 98c99a0 into samtools:develop Mar 19, 2026
8 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants