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Version 3.1.5

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@mojaveazure mojaveazure released this 17 Apr 17:39
· 4959 commits to master since this release
v3.1.5
b51801b
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Learn about vigilant mode.

Changes

  • Replace wilcox.test with limma implementation for a faster FindMarkers default method
  • Better point separation for VlnPlots when using the split.by option
  • Efficiency improvements for anchor pairing
  • Deprecate redundant sort.cell parameter in FeaturePlot
  • Fixes to ensure correct class of Matrix passed to c++ functions
  • Fixes for underscores in ident labels for DotPlot
  • Ensure preservation of matrix dimnames in SampleUMI
  • Fix non-standard evaluation problems in subset and WhichCells
  • Default split violin option is now a multi group option
  • Preserve alpha in FeaturePlot when using blend
  • Update assay.used slot for DimReducs when Assay is renamed

Additions:

  • New scale parameter in DotPlot
  • New keep.sparse parameter in CreateGeneActivityMatrix for a more memory efficient option
  • Added ability to store model learned by UMAP and project new data
  • New stip.suffix option in Read10X
  • Added group.by parameter to FeatureScatter
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