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Version 4.0.4

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@mojaveazure mojaveazure released this 27 Aug 13:35
· 2840 commits to master since this release
v4.0.4
13b615c
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Changes

  • Warn and continue rather than erroring if not all features are available in FindSpatiallyVariableFeatures() (#4611)
  • Bug fix for SCT-based integration in selecting proper reference model (#4355)
  • Bug fix for reading from absolute paths in ReadMtx (#4723)
  • Bug fix in SingleCellExperiment conversion (#4633)
  • Bug fix in FindVariableFeatures() when using selection.method = "mvp" and binning.method = "equal_frequency" (#4712)
  • Bug fix in DoHeatmap() to remove random characters from plot legend(#4660)
  • Fix cell renaming in RunCCA()
  • Fix issue in SingleCellExperiment conversion where the mainExp would not be set properly
  • Fix for default dispersion info displayed in VariableFeaturePlot()

Additions

  • Add reduction parameter to BuildClusterTree() (#4598)
  • Add DensMAP option to RunUMAP() (#4630)
  • Add image parameter to Load10X_Spatial() and image.name parameter to Read10X_Image() (#4641)
  • Add ReadSTARsolo() function to read output from STARsolo
  • Add densify parameter to FindMarkers()
  • Add ReadParsebio() function to read output from Parse Biosciences
  • Add the image.alpha parameter to SpatialDimPlot() and SpatialFeaturePlot()
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