EEGPrep 0.3.0

What's Changed

• Merge pull request #30 from sccn/setup-documentation

Creating documentation and update eegprep functions by @bruAristimunha in #31

• Updating the documentation by @bruAristimunha in #34
• Add Claude Code GitHub Workflow by @arnodelorme in #36
• Fix test cases and improve MATLAB parity by @arnodelorme in #37
• docs: fix quickstart mismatch, add logo, harden CI (closes #40, #41) by @bruAristimunha in #42
• Update Claude Code PR review prompt by @suraj-ranganath in #47
• Add agent workflows and pre-commit checks by @suraj-ranganath in #48
• Add pop_adjustevents GUI parity workflow by @suraj-ranganath in #49
• Use pytest as the test runner by @suraj-ranganath in #51
• Organize EEGPrep around EEGLAB-style layout by @suraj-ranganath in #50
• Add EEGLAB-style cart2topo, pop_reref, and pop_interp parity workflows by @suraj-ranganath in #52
• Add EEGLAB-style main window menu parity by @suraj-ranganath in #53
• Polish EEGPrep GUI startup and menus by @suraj-ranganath in #55
• [GUI] Add pop and File menu actions by @suraj-ranganath in #56
• Use CommonAverageReference consistently in bids_preproc reports by @AmanJaiswal1503 in #57
• Add shared EEGPrep console and GUI workflow fixes by @suraj-ranganath in #58
• Add Ruff and ty CI checks by @suraj-ranganath in #59
• [Phase 1a] Stabilize EEG session contracts by @suraj-ranganath in #68
• [Phase 2.1] Implement pop_rmbase baseline parity by @suraj-ranganath in #70
• [Phase 1b] Add dataset metadata dialogs by @suraj-ranganath in #71
• [Phase 3] Implement ICLabel component workflows by @suraj-ranganath in #69
• [Plot] Implement topography plot foundation by @suraj-ranganath in #72
• Complete Phase 1b File/Edit parity by @suraj-ranganath in #74
• [Phase 2] Complete FIR filtering parity by @suraj-ranganath in #73
• [Phase 3] Implement rejection and component workflows by @suraj-ranganath in #76
• [Phase 4] Add plotting core wrappers by @suraj-ranganath in #75
• Phase 4 PR 2: Add 3D headplot spline/coregistration parity by @suraj-ranganath in #77
• [DIPFIT] Implement source-localization menu surfaces by @suraj-ranganath in #84
• Add Phase 4 time-frequency and statistics workflows by @suraj-ranganath in #85
• Implement STUDY metadata and design workflow by @suraj-ranganath in #89
• [Study] Add packaged help and menu docs by @suraj-ranganath in #87
• Phase 6b: public API and plugin packaging by @suraj-ranganath in #88
• [STUDY] Implement measure precompute workflows by @suraj-ranganath in #91
• Phase 5c STUDY component clustering by @suraj-ranganath in #90
• [Epic] Integrate EEGLAB parity phases 1-4 by @suraj-ranganath in #86
• Phase 6c standalone STUDY integration hardening by @suraj-ranganath in #92
• [EEGBrowser] Implement eegplot browser foundation by @suraj-ranganath in #102
• Implement EEGBrowser Phase 2 UI shell by @suraj-ranganath in #104
• [EEGBrowser] Add marking and rejection callbacks by @suraj-ranganath in #103
• Implement pop_eegplot menu session workflows by @suraj-ranganath in #105
• [EEGBrowser] Integrate rejection workflows by @suraj-ranganath in #107
• Implement advanced EEGBrowser display modes by @suraj-ranganath in #106
• Phase 8: ICLabel extended properties dashboard by @suraj-ranganath in #109
• [EEGBrowser] Complete Phase 7 closeout by @suraj-ranganath in #110
• [STUDY] Complete standalone integration by @suraj-ranganath in #93
• Add extension SDK registry by @suraj-ranganath in #120
• [Extensions] Integrate runtime contributions by @suraj-ranganath in #125
• Add extension governance validation tooling by @suraj-ranganath in #122
• Document external extension workflow by @suraj-ranganath in #121
• [Extensions] Add authoring toolkit examples by @suraj-ranganath in #123
• Build extension manager catalog UX by @suraj-ranganath in #124
• Harden extension closeout coverage by @suraj-ranganath in #126
• [EEGBrowser] Complete eegplot parity by @suraj-ranganath in #111
• [Extensions] Add external extension ecosystem by @suraj-ranganath in #127
• [Session] Fix dataset commits and history progress by @suraj-ranganath in #128
• [Parity] Add core matrix contracts by @suraj-ranganath in #140
• [Parity] Implement statistics package by @suraj-ranganath in #141
• [Parity] Add Phase 2 file channel-location workflows by @suraj-ranganath in #142
• [Parity] Add time-frequency internals by @suraj-ranganath in #143
• [STUDY] Add group-level depth helpers by @suraj-ranganath in #144
• Phase 5: close user-facing option gaps by @suraj-ranganath in #145
• [Parity] Implement Phase 7 long-tail helpers by @suraj-ranganath in #150
• [Parity] Close Phase 8 core parity evidence by @suraj-ranganath in #151
• [PAC] Classify PAC time-frequency helpers by @suraj-ranganath in #153
• [Timefreq] Port correct_mc random-symbol fitting by @suraj-ranganath in #154
• [Timefreq] Add time-warped newtimef helpers by @suraj-ranganath in #155
• [STUDY] Implement long-tail selection helpers by @suraj-ranganath in #156
• [Parity] Add final standalone audit matrix by @suraj-ranganath in #166
• Complete clean_rawdata and FIRFilt parity by @suraj-ranganath in #171
• [ICLabel] Complete viewprops diagnostics parity by @suraj-ranganath in #167
• Add standalone DIPFIT source-localization parity by @suraj-ranganath in #169
• Implement STUDY PAC and LIMO design workflows by @suraj-ranganath in #170
• [Storage] Implement large-dataset storedisk semantics by @suraj-ranganath in #168
• Build standalone EEGPrep Sphinx manual and tutorials by @suraj-ranganath in #172
• [Parity] Close final standalone evidence by @suraj-ranganath in #173
• [Quality] Fix session sync and MNE conversion invariants by @suraj-ranganath in #189
• Fix EEGBrowser visual parity axes by @suraj-ranganath in #130
• [Parity] Complete remaining EEGLAB core gaps by @suraj-ranganath in #152
• [Epic] Complete standalone EEGLAB parity by @suraj-ranganath in #174
• Add agent-friendly EEGPrep CLI by @suraj-ranganath in #176
• [pkg] Move dev tooling out of the wheel and clean dead code (Fable 5 Phase 5) by @suraj-ranganath in #201
• [tests] Make the test suite able to fail (Fable 5 Phase 1) by @suraj-ranganath in #200
• [core] Stop mutating caller EEG and fix ICA sign-flip invariant (Fable 5 Phase 2) by @suraj-ranganath in #202
• [core] Fix correctness bugs, silent failures & misleading contracts (Fable 5 Phase 3) by @suraj-ranganath in #203
• [arch] Kill duplication, fix ownership & layering (Fable 5 Phase 4) by @suraj-ranganath in #204
• [Agents] Replace autoreview skill and fix quality findings by @suraj-ranganath in #177
• Keep GUI responsive during ICA runs by @suraj-ranganath in #190
• Bump torch lockfile resolution to 2.12.0 to clear GHSA-rrmf-rvhw-rf47 by @suraj-ranganath with @Copilot in #191
• [Epic] Fable 5 Findings — whole-codebase code-quality remediation by @suraj-ranganath in #206
• [Epic] Close out Fable 5 architecture findings by @suraj-ranganath in #220
• Revamp project README by @suraj-ranganath in #221
• [Console] Fix background ICA logging by @suraj-ranganath in #223
• Update docs deploy branch and landing copy by @suraj-ranganath in #224
• Match MATLAB column-major average reference (float32 parity) by @arnodelorme in #232
• Pin fetchable EEGLAB reference by @suraj-ranganath in #225
• Fix dark-mode dialog contrast by @suraj-ranganath in #226
• Enable event and channel dialog navigation by @claude[bot] in #230
• Fix pop_select dialog crash on numpy chanlocs by @claude[bot] in #231
• Port numdim, eeg_ms2f, and spher to Python by @innaamogolonova in #261
• Spectopo plot converison by @innaamogolonova in #282
• Change default colormap to turbo by @innaamogolonova in #283
• pop_topoplot conversion by @innaamogolonova in #286
• Fix spectopo epoched-data averaging to match MATLAB by @claude[bot] in #295
• Accept Python key=value options in pop_spectopo dialog by @claude[bot] in #293
• spectopo: match EEGLAB component spectra plot by @innaamogolonova in #296
• timtopo conversion by @innaamogolonova in #297
• Display figures from GUI/console and add a plot on/off flag by @innaamogolonova in #298

New Contributors

• @AmanJaiswal1503 made their first contribution in #57
• @claude[bot] made their first contribution in #230
• @innaamogolonova made their first contribution in #261

Full Changelog: v0.2.23...v0.3.0