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use scverse-misc for dataset registry and downloads#480

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kaizhang merged 1 commit into
mainfrom
rx/scverse-misc-datasets
Jul 13, 2026
Merged

use scverse-misc for dataset registry and downloads#480
kaizhang merged 1 commit into
mainfrom
rx/scverse-misc-datasets

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@PPSherry

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Implements #472 by moving dataset metadata into snapatac2/datasets.yaml and routing downloads through scverse-misc[datasets].

  • Add YAML registry for all 22 dataset files.
  • Use scverse-misc for registry parsing and fetching.
  • Preserve existing snap.datasets.* and snap.genome.* APIs.
  • Add runtime fallback to original URLs if the new URL fails.
  • Bump Python requirement to >=3.12.
  • Drop Python 3.11 wheel builds.

@PPSherry

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tests/test_pipeline.py::test_backed currently fails with a backed-mode complex128 panic in spectral(). This appears unrelated to the dataset migration and will be filed separately.

@kaizhang kaizhang merged commit 5f20b98 into main Jul 13, 2026
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2 participants