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fix ci #976

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Merged
Zethson merged 2 commits into from
May 18, 2026
+15 −4
Merged

fix ci #976

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6cdf32b
fix ci
Zethson May 18, 2026
b3f65a2
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] May 18, 2026
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16 changes: 12 additions & 4 deletions pertpy/tools/_perturbation_space/_perturbation_space.py
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Original file line number Diff line number Diff line change
Expand Up @@ -233,11 +233,15 @@ def add(
new_perturbation.obs = new_obs

for key, value in data["layers"].items():
key_name = key.removesuffix("_control_diff") if key.endswith("_control_diff") else key
key_name = (
key.removesuffix("_control_diff") if isinstance(key, str) and key.endswith("_control_diff") else key
)
new_perturbation.layers[key_name] = value

for key, value in data["embeddings"].items():
key_name = key.removesuffix("_control_diff") if key.endswith("_control_diff") else key
key_name = (
key.removesuffix("_control_diff") if isinstance(key, str) and key.endswith("_control_diff") else key
)
new_perturbation.obsm[key_name] = value

new_perturbation.obs[target_col] = new_perturbation.obs_names.astype("category")
Expand Down Expand Up @@ -336,11 +340,15 @@ def subtract(
new_perturbation.obs = new_obs

for key, value in data["layers"].items():
key_name = key.removesuffix("_control_diff") if key.endswith("_control_diff") else key
key_name = (
key.removesuffix("_control_diff") if isinstance(key, str) and key.endswith("_control_diff") else key
)
new_perturbation.layers[key_name] = value

for key, value in data["embeddings"].items():
key_name = key.removesuffix("_control_diff") if key.endswith("_control_diff") else key
key_name = (
key.removesuffix("_control_diff") if isinstance(key, str) and key.endswith("_control_diff") else key
)
new_perturbation.obsm[key_name] = value

new_perturbation.obs[target_col] = new_perturbation.obs_names.astype("category")
Expand Down
3 changes: 3 additions & 0 deletions pertpy/tools/_perturbation_space/_simple.py
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Original file line number Diff line number Diff line change
Expand Up @@ -171,6 +171,9 @@ def compute(
if mode in ps_adata.layers:
ps_adata.X = ps_adata.layers[mode]

if None in ps_adata.layers:
del ps_adata.layers[None]

missing_cols = [col for col in original_obs.columns if col not in ps_adata.obs.columns]
new_cols_data = {}

Expand Down
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