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deps: bump log / env_logger / bstr / noodles, and dedupe noodles-bgzf
Consolidates the four Rust-dependency dependabot bumps into one verified PR, plus the follow-up dependabot's noodles bump needs but doesn't include (deduping
noodles-bgzf).Supersedes / closes #99, #129, #130, #131.
Bumps
logenv_loggerbstrnoodlesnoodles-sam0.85→0.87,noodles-bam0.90→0.92,noodles-csi0.56→0.58)noodles-bgzfWhy the extra
noodles-bgzfbumpnoodles0.113 depends onnoodles-bgzf0.49 internally, while our direct dep (the BAM writer'slibdeflateBGZF path) was pinned to 0.47 — so bumpingnoodlesalone (dependabot #130) leaves twonoodles-bgzfversions in the tree (0.47 + 0.49). Bumping our direct dep to 0.49 dedupes to a single version; thelibdeflatefeature is intact and BAM output is unchanged.Validation
clippy --all-targets0 warnings;fmtclean.noodlesminor bump).noodles-bgzfversion in the dep tree after the dedupe.