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Backport PR #4015 on branch 1.12.x (fix: use fast-array-utils’ threadsafe njit)#4022

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flying-sheep merged 2 commits into1.12.xfrom
auto-backport-of-pr-4015-on-1.12.x
Mar 31, 2026
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Backport PR #4015 on branch 1.12.x (fix: use fast-array-utils’ threadsafe njit)#4022
flying-sheep merged 2 commits into1.12.xfrom
auto-backport-of-pr-4015-on-1.12.x

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Backports #4015

@flying-sheep flying-sheep enabled auto-merge (squash) March 31, 2026 08:52
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codecov bot commented Mar 31, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.41%. Comparing base (0a4a597) to head (786f7f1).
⚠️ Report is 1 commits behind head on 1.12.x.
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@            Coverage Diff             @@
##           1.12.x    #4022      +/-   ##
==========================================
+ Coverage   78.36%   78.41%   +0.05%     
==========================================
  Files         117      117              
  Lines       12626    12597      -29     
==========================================
- Hits         9894     9878      -16     
+ Misses       2732     2719      -13     
Flag Coverage Δ
hatch-test.low-vers 77.73% <100.00%> (+0.08%) ⬆️
hatch-test.pre 57.54% <100.00%> (-19.77%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scanpy/_compat.py 84.31% <100.00%> (+12.72%) ⬆️
...c/scanpy/experimental/pp/_highly_variable_genes.py 94.23% <100.00%> (+0.05%) ⬆️
src/scanpy/metrics/_gearys_c.py 100.00% <100.00%> (ø)
src/scanpy/metrics/_morans_i.py 100.00% <100.00%> (ø)
src/scanpy/preprocessing/_normalization.py 94.73% <100.00%> (+0.07%) ⬆️
src/scanpy/preprocessing/_qc.py 94.48% <100.00%> (-1.36%) ⬇️
src/scanpy/preprocessing/_scale.py 91.30% <100.00%> (+0.09%) ⬆️
src/scanpy/preprocessing/_simple.py 90.93% <100.00%> (+0.02%) ⬆️
src/scanpy/tools/_rank_genes_groups.py 92.75% <100.00%> (+0.02%) ⬆️

... and 2 files with indirect coverage changes

@flying-sheep flying-sheep merged commit 48c7783 into 1.12.x Mar 31, 2026
11 checks passed
@flying-sheep flying-sheep deleted the auto-backport-of-pr-4015-on-1.12.x branch March 31, 2026 09:17
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