Skip to content

Bring minimal stalign function #1146

@selmanozleyen

Description

@selmanozleyen

Description of feature

Ok here is the plan I have for this.

  • We will only support point cloud case for now, later we can make additions.
  • Will call it stalign and won't expose it as if it's a function that aligns everything. So that we can add other methods and have our monolith align function later as this goes
  • If there is serious preprocessing needs to be done on point clouds it should be a different function called stalign_preprocess. If that is the case then there might be more optimal ways to handle this but let's just go with something we can ship as is.
  • We shouldn't make guarantees on the stability of these unexposed API's
  • plotting/scoring will be a separate issue
  • I will do it in jax as it's better than torch and stalign doesn't rely on it so heavily

Metadata

Metadata

Assignees

Labels

squidpy2.0Everything releated to a Squidpy 2.0 release

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions