BioMark v0.5.1

Minor update — Zenodo DOI registration

• Added --share flag for community score submission
• Fixed README example output with real M1 Air scores
• Added Share Your Score section to README

BioMark v0.5.0 — Initial Release

🧬 BioMark v0.5.0 — Initial Release

First stable release of BioMark — an open-source bioinformatics benchmark tool.

What's included:

• 8 pipeline modules: DNA/WES, RNA-seq, scRNA-seq, Protein, Epigenomics, Metagenomics, Long Read, Assembly
• Honest PASS/FAIL hardware assessment per pipeline step
• Beautiful HTML report with charts
• Automatic hardware detection (RAM, CPU, SSD, GPU)
• 27 unit tests passing
• CI/CD with GitHub Actions
• Supports macOS, Linux, Windows WSL2
• No bioinformatics tools needed to install

Quick Start:

git clone https://github.com/shahbazigenomics/BioMark.git
cd BioMark
pip install -r requirements.txt
python src/main.py --all