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BioMark v0.5.0 — Initial Release

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@shahbazigenomics shahbazigenomics released this 16 Jun 15:53
· 1 commit to main since this release
v0.5.0
55e49a1

🧬 BioMark v0.5.0 — Initial Release

First stable release of BioMark — an open-source bioinformatics benchmark tool.

What's included:

  • 8 pipeline modules: DNA/WES, RNA-seq, scRNA-seq, Protein, Epigenomics, Metagenomics, Long Read, Assembly
  • Honest PASS/FAIL hardware assessment per pipeline step
  • Beautiful HTML report with charts
  • Automatic hardware detection (RAM, CPU, SSD, GPU)
  • 27 unit tests passing
  • CI/CD with GitHub Actions
  • Supports macOS, Linux, Windows WSL2
  • No bioinformatics tools needed to install

Quick Start:

git clone https://github.com/shahbazigenomics/BioMark.git
cd BioMark
pip install -r requirements.txt
python src/main.py --all

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