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bambu-nf 1.0.0

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@apsteinberg apsteinberg released this 27 May 14:02

Initial release of shahcompbio/bambu-nf, created with the nf-core template.

Added

  • Transcript assembly & quant with bambu
  • Flags to pre-filter reads before assembly on read length & mapq (useful for samples with inadequate QC)
  • Flags to pre-filter reads on accessory chromosomes (can sometimes cause issues for Bambu)
  • Flag to adjust NDR in bambu