Exogenous sequences in tumors and immune cells v2.0

Added krakenuniq-based filters. For analysis, we now recommend using the krakenuniq unnormalized, filtered counts or the abundance relative to human calculated with the unnormalized, filtered counts.

transcript_genome_filter(counts, "humanRNA.uniq")

Exogenous sequences in tumors and immune cells v1.2

Additional function to calculate the abundance relative to human counts. For analysis, we now recommend using the unnormalized, filtered counts or the abundance relative to human calculated with the unnormalized, filtered counts.

Full Changelog: v1.1...v1.2

exogenous sequences in tumors and immune cells v1.1

Added four new filters to remove taxa that have any mapping reads when the human or mouse reference genome or transcriptome is searched against the exotic database at https://go.osu.edu/exotic-database

Exogenous sequences in tumors and immune cells

First release with journal submission.