A bioinformatics tool for primer design

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

design common and specific primer for LAMP using the whole genome

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

A Viral detection tool from High-Throughput Sequencing (HTS) data

Tool for analysing viral diversity from High Throughput Sequencing

Quasitools is a collection of tools for analysing viral quasispecies data.

🌈 Interactive analysis of metagenomics data

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

Official git repository for Biopython (originally converted from CVS)

Genome assembly evaluation tool

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

The second version of the Kraken taxonomic sequence classification system

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html