Multi-modal data augmentation for machine learning

Rigid registration for 3D MRI

Trim a 3D volume (slices) based on its ROI.

Python library for fast 3D mathematical morphology using CUDA

Blender rendering codes for doc3D-dataset (Paper: https://www3.cs.stonybrook.edu/~cvl/projects/dewarpnet/storage/paper.pdf)

I/O routines useful to MicroView

Synthetic 3d image generation for Vascular Deformation Project.

3D CNN to predict single-phase flow velocity fields

Quantifying the dynamics of long-range cell-cell mechanical communication paper code

Easy-to-use 3D image viewer to include into your medical image processing pipelines.

[IEEE JBHI] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!

A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS

A scalable implementation of WobblyStitcher for 3D microscopy images

A set of tools for characterizing and analying 3D images of porous materials

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

Easy Volumetric Segmentation with Deep Learning