The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
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Updated
Jul 17, 2024 - R
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Docs for AmpliPiper, developed by @nhmvienna
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
short-read amplicon data visualization suite
NanoASV official repo
Metabarcoding pipeline
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
A state-of-the-art snakemake workflow for amplicon sequencing
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
metagenome simulation for targeted and reduced-representation sequencing
Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
In-silico PCR, primer design and padlock design for in-situ sequencing
Workflow and R scripts for Giongo et al. (2024)
This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
MicrobioSee2, a desktop sofware for visulization of microbiome result, which contian multiple modules, such as Alpha Diversity, Beta Diversity, Species Conpositions, volcano plot, and pie chart.
Microbial Community Analysis with Chipster
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
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