DELEAT is a bioinformatic analysis pipeline for the design of large-scale genome deletions in bacterial genomes.
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Updated
Feb 22, 2022 - Python
DELEAT is a bioinformatic analysis pipeline for the design of large-scale genome deletions in bacterial genomes.
Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
Pipeline for de novo assembly of bacterial genomes from paired-end Illumina reads
Python scripts that predict and plot the location of the origin of replication (oriC) of circular bacterial genomes based on Z-curve analysis, GC-skew analysis. and certain gene locations
Bioinformatics
Food wastE biopEptiDe claSsifier: from microbial genome to biopeptides function
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
Bacterial plasmid annotation pipeline
Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
from trinity assembly to deep learning.
interpro to graphs for analyzing domains.
interpro domain analyzer
bacterial genome deep learning using keras
pangenome metagenomics normalizer for gene annotations specifically gene ontologies.
analyzing bacterial genome based ontologies and phylogenomics informativeness
genome annotation analyzer for the microbiome analysis
Medium scale identification of genomic neighbors in bacterial genomes
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