Toolbox for molecular animations in Blender, powered by Geometry Nodes.
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Updated
Jun 17, 2024 - Python
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
COBRApy is a package for constraint-based modeling of metabolic networks.
Python package to study microbial communities using metabolic modeling.
Analysis of non-covalent interactions in MD trajectories
Contact map analysis for biomolecules; based on MDTraj
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
A python package to analyse qPCR data for single-use or high-throughput application
A Python parser for the BRENDA database
AutoML system for building trustworthy peptide bioactivity predictors
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
Ligand-binding site classification with deep graph neural networks.
semi-supervised deep learning for classification of molecular structures
Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams
Use the parallelization framework jug to build exposons!
A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.
Bioinformatics (biochemistry) data processing scripts for NMR, and protein data analysis (PyMOL)
Python package and workflow for EFM calculation via (mp)lrs and efmtool
Automatic pathway assembly with the YeastPathwayKit
Software for the Analysis and Continuous Monitoring of Electrochemical Systems.
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