This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️
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Updated
Aug 27, 2020 - Shell
This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️
A comprehensive pipeline for RNAseq data analysis
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
Common BASH routines for computational biology
summarise antiSMASH 5.0 KnownClusterBlast output
A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.
single copy pangenome analysis from alignments to phylogeny and support GTRCAT and GTRGAMA model
Bash script: Data QC, read mapping, extracting unmapped reads, read counts
GWAS analysis
slurm and pbs scripts for genome, metagenome, transcriptome analysis.
Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.
Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
script to perform amplicon sequencing analysis for Norovirus genotypes and variants
Project for the Epigenomics course of Bioinformatics for Computational Genomics MSc
Search and Alignment Tool in Bioinformatics Domain
Pipeline to prepare RNA sequencing data for tandem repeat annotation with TRAL
portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis
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