bioinformatics-tool
Here are 30 public repositories matching this topic...
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
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May 14, 2024 - C++
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
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Mar 11, 2024 - C++
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
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Apr 28, 2024 - C++
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
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Apr 19, 2022 - C++
Linear-time de novo Long Read Assembler
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May 7, 2024 - C++
A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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Mar 19, 2023 - C++
fast and comprehensive k-mer counting package
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Sep 27, 2021 - C++
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
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May 12, 2024 - C++
Incremental building of phylogenetic distance tree
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May 13, 2024 - C++
A gRNA database generation tool.
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Apr 4, 2024 - C++
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
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Apr 21, 2024 - C++
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
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Jan 14, 2022 - C++
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
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Apr 16, 2020 - C++
A tool for mass spectrometry data analysis.
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Aug 21, 2023 - C++
The repo was not under development. Check out angsd toolkit for low depth data analyses.
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Sep 2, 2020 - C++
A bioinformatics tool, named Sequence Similarity 3D
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Mar 31, 2021 - C++
summarize and visualize the genotypes categories per sample in a VCF file
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Jul 11, 2019 - C++
PARamrfinder is a high performance parallel tool to predict allele-specific DNA methylation (ASM) in mammals in the absence of SNP data.
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Feb 7, 2024 - C++
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