Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Bioinformatics containers
📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.
🐳 Bio-dockers: dockerized bioinformatic tools
Repository with all my container recipes 👩🍳
Docker container for bioinformatics tools and pipelines
Containerize Bioconductor Workflows
Dockerfiles for tools commonly used for phylogenetic analyses
Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.
Lightweight Alpine-based Docker images for common bioinformatics tools
Repo for running command line-based PatMatch in Jupyter environment provided via Binder.
Docker containers of Computational Biology of Aging Group
Learn how to annotate a genome with Rfam families using Infernal
Docker and Singularity containers for Bioinformatics programs
A web application for in-silico data exploration of biological databases
A collection of Dockerfiles for different containers I use.