DNA barcoding analysis pipeline
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Updated
Jul 20, 2023 - Python
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
DNA barcoding analysis pipeline
LongReads is a pipeline that compares intra and inter-genomic variation of the 16S region in bacterial species
A collection of various biopython scripts.
Short scripts for fetching nucleotide (FASTA), SRA (fastq), protein/gene information and Publication records from NCBI database for Solanum_Hugassii. Scripts can be modified to extract information for other species too.
Automated Tool for Global Screening Array analysis
A collection of simple python tools for molecular biology and bioinformatics
Research project for the Breaker Lab
Currents scripts and pipeline used for counting GC3 on: 20 Lepidoptera species, 33 Hymenoptera species, 42 Diptera species and 15 Coleoptera species using ensemble DToL data
Small Long-read Assembler for Educational Purposes.
From second generation sequencing reads to base counts
A Python based server for making Gibson cloning a little faster
Modeling the molecular dynamics of Barstar/Barnase protein complex in solution
Python code to retrieve isoforms from uniprot for Glyconnect.
A command-line implementation of the 3DPatch pipeline.
My solutions for rosalind problems
Basic epidemic simulator, written in Python 3.
A simple way to map gene names/accession numbers/UniProt IDs/etc to other denominations in a Pandas Dataframe