Un script de python que usa BLAST, MUSCLE y PROSITE para analizar una serie de proteínas

Bacterial cells can be attached to the surface of a glass slide through their flagella which results in the cell body to rotate because of the presence of the bacterial flagellar motor, this program calculates angular velocity, number of frames rotated in clockwise direction and anti clockwise direction, frequency, length of cell, the center of …

Bioquant is an (undeployed) experimental graphic user intefrace for the Biopython computational biology library. Its aim is to facilitate usage of computational molecular biology tools for Life Science researchers. Currnet app functionality consists of basic parsing and rudimentri genomic analysis of Fasta records.

DNA toolkit package for easier analysis

The project is based on the paper Sequence Alignment by Cross-Correlation and bridges the gap between the knowledge and an useful implementation.

Implementation of Needleman-Wunsch's algorithm for sequences alignment using BLOSUM62 matrix

Analysis of FASTA ,Protein,DNA sequence.

The SiLA 2 Manager for rapid device integration and workflow automation. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711022000103

Pipeline developed during my MSc thesis: "Detection of Metagenomic Enzyme Variants of Biotechnological and Ecological Interest: The Case of Plastic-Degrading Enzymes"

Biotechnology laboratory control system migrated to Python-QT in Linux

Solves the buffer preparation vessel sizing and assignment problem using mixed integer linear programming.

Web scraping biotech company information

My PhD dissertation

Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3

Python/Bash/MATLAB tools for analyzing and visualizing high-throughput biochemical array data

Image acquisition routine for the Scanning Lab at the Allen Institute for Brain Science

A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.

High-Performance Automatic Differentiation for Python

In the realm of EKG/ECG analysis, deep learning models have made significant strides. However, the pursuit of efficiency and accuracy persists. The proposed Mamba Biometric EKG Analysis Technology (MambaBEAT) project aims to utilize the Mamba model, a promising sequence modeling architecture, to further advance EKG analysis.

Estimation of extracellular fluxes and growth rate