Different Computations Solutions for Bioinformatics Problems from a bioinformatics course at Chalmers Institute of Technology

Solutions for bioinformatics problems on Rosalind.info in Java

FLiCK - Format LeveragIng Compression frameworK

HemoPI is an in silico method to predict hemolytic property of peptide. It also allows users to design better therapeutic peptide analog with desirable hemolytic potencies

My solutions to problems from Rosalind.info to understand algorithmic problems in real life bioinformatics.

DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.

Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains.

PoGo is a proteogenomic tool developed primarily by Christoph Schlaffner. PoGo's purpose is to map peptides identified through mass spectrometry to a given genome. My edits of the tool are in order to expand its functionality to allow for the input of novel peptides without protein-coding region (CDS) annotation. The program is open-source and a…

Automated Reproducibility and Testing Environment for Licensed Software

Hackday project

the SBML module of BiVeS

Various utilities regarding Levenshtein transducers. (Java)

The Smith-Waterman algorithm finds the optimal alignment of two sequences using dynamic programming techniques; Smith-Waterman is commonly used for DNA sequence alignment

Useful NGS utilities for everyday use in the form of stand-alone tool.

Computing the Edge of the Mandelbrot Set with a Turing Machine

A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

Programming and numeric computing platform for math modeling and visualization with fully functional programming language

A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.