Autogating for gate 1 and gate 2 with U-Net.
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Updated
Nov 5, 2022 - Python
Autogating for gate 1 and gate 2 with U-Net.
A meta-package to test pipelines of image processing tools and cytometry-style calibration.
Cowfish: an Aquarium cytometry results analyzing package in Python
Shape-Out has been superseded by Shape-Out 2.
Pipeline for flow cytometry anlaysis
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.
Image Mass Cytometry analysis pipeline
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
A Python library for reading and writing Flow Cytometry Standard (FCS) files
A data-centric flow/mass cytometry automated analysis framework
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
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