Jupyter notebooks for BFG-PCA related simulation and analysis.
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Updated
Sep 6, 2022 - Python
Jupyter notebooks for BFG-PCA related simulation and analysis.
Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.
Arctic Community Similarity using DNA Barcoding Data
DNA BARCODE Statistics : Number of GBIF BOLD entries 2014-11-27
Map plotting with Plotly using public BOLD API COI data
DNA barcoding analysis pipeline
Linking BOLD sequences to specimens in GBIF
Extract ITS and Neighboring Regions from Eukaryotic DNA Sequences
Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
Jupyter notebooks for BFG-PCA related simulation and analysis.
A Go package for designing DNA.
Code and data used for analysis and estimation of invertebrate biodiversity on a temperate forested island (Hauturu) based on DNA barcodes and soil DNA metabarcoding data.
Barcode Generator
bistro: barcode distribution
Artifact repository for the paper "Scalable Classification of Organisms into a Taxonomy Using Hierarchical Supervised Learners", Journal of Bioinformatics and Computational Biology, 18(05), 2050026. doi:10.1142/S0219720020500262
FISHprobe: DNA Probe Design Pipeline
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
This bartender version could handle arbitrary length of barcode
A Go package for engineering organisms.
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