program for splitting a fastq file into separate files

downsample fasta/fastq files to given number of base pairs

Data Analysis for Genomics, FASTQ File Structure and Analysis using Python.

A Rust program to calculate base yield over phred scores or base yield over length for a fastq file

A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.

It splits a fastq file containing R1 and R2 reads.

Tools to analyze fasta or fastaq files with python.

Download fastqs or supplementary files from GEO and upload to hca-util bucket

FLiCK - Format LeveragIng Compression frameworK

Parallel Windowed Adaptive Trimming for fastq files using quality

3 programs in C that filter .fastq files

Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.

Super ultra-fast fastq preprocessor, using parallel windowed adaptive trimming.

A sorting method for encoding metagenomic data

fastq file compression program

work with the time stamps of Oxford Nanopore (ONT) fastq files

Build Docker container for FASTX Toolkit and (optionally) convert to Apptainer/Singularity.