Zebrafish embryo fluorescence quantification
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Updated
Jun 5, 2024 - Python
Zebrafish embryo fluorescence quantification
Physically corrected projectors for X-ray induced emission CT.
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
Supplemental resources for the Nellie paper.
This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Analyze fluorescence lifetime and anisotropy decays. (Mirror of github.com/fdsteffen/Lifefit)
(Legacy project) A modular laboratory experiment management suite, predecessor to qudi-core.
A python code for analyzing photobleaching in fluorescence microscopy from a time series TIF image stack
Global analysis platform for fluorescence data
An interactive image processing program for biologists written in Python.
This repository contains a python code which calculates level populations and fluorescence efficiencies (g-factors) for atoms (or molecules) in the presence of a radiation field (e.g. the solar spectrum).
🏮 Parsing and analysing platereader absorbance and fluorescence data.
Self-supervised models for encoding protein localization patterns from microscopy images
A suite of command line tools and a web app for plotting and analyzing fluorescence data.
A Feature-Driven Richardson-Lucy Deconvolution Network
Software and data associated with the article titled, "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA," Biophys. J. Accepted, (2023). doi:10.1016/j.bpj.2023.03.002
A simple fluorescence microscopy simulation and visualization tool
A Python toolbox for quantitative, reproducible flow cytometry analysis
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