TAPAS - Translational Algorithms for Psychiatry-Advancing Science

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

Code supporting 'Geometric constraints on human brain function'

Automatic Analysis (aa)

Group ICA/IVA software (MATLAB)

SPM (Statistical Parametric Mapping) - Development Version

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

Standalone MATLAB implementation of permutation TFCE correction

MATLAB toolbox for visualizing brain data on surfaces.

GNU Octave library for connectivity analysis in large fMRI datasets

Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox

Machine Learning in NeuroImaging (MALINI) is a MATLAB-based toolbox used for feature extraction and disease classification using resting state functional magnetic resonance imaging (rs-fMRI) data. 18 different popular classifiers are presented. With slight modifications, it can also be used for any classification problem using any set of features.

Fusion ICA Toolbox (MATLAB)

Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12

Insight & Inference for DVARS: 3-part variance decomposition, gives units & p-values to DVARS measures as well as spatiotemporal rs-fMRI diagnostic.

Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

xDF estimates variance of Pearson's correlations among highly autocorrelated time series.

a set of function to make it easier to create behavioral, EEG, fMRI experiment with psychtoolbox

Collection of Matlab functions for denoising fMRI data

A Matlab-based software package for preprocessing the resting-state fMRI data