Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
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Updated
Jan 24, 2018 - Python
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Eukaryotic Genome Annotation Pipeline
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
convert various features into a GFF-like file for use in genome browsers
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
Earl Grey: A fully automated TE curation and annotation pipeline
A fully automated gene annotator from RNA-Seq expression data
Example client programs for Saphetor's VarSome annotation API
Galaxy tools for Genome Annotation
TREDPARSE: HLI Short Tandem Repeat (STR) caller
B73Ab10 genome assembly methods
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Pipeline for annotating genomes using long read transcriptomics data with pinfish
Efficiently keep track of changes to genomes
Papillomavirus genome annotation tool
Semantically Interoperable Genome Annotations
The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01
Spfy: an integrated graph database for real-time prediction of Escherichia coli phenotypes and downstream comparative analyses
Workflow for identifying and classifying homologous gene/protein sequences
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