Micro genome assembler. Uses BWT for seeding/pattern matching and a greedy score based aligner.
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Updated
Nov 20, 2023 - C++
Micro genome assembler. Uses BWT for seeding/pattern matching and a greedy score based aligner.
An efficient approach for constructing de-bruijn graph for genome assembly
Assembling Genome of phi x 174 from random reads using various techniques.
Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly
GPU implementation of Abyss: A parallel assembler for short read sequence data
Linear-time de novo Long Read Assembler
Fast and memory-efficient noisy read overlapping with KD-trees
this is repo about my solutions of problems in Data Structures and Algorithms Specialization in coursera site from algorithmic toolbox to Genome Assembly Programming Challenge
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
A fast tool for hybrid genome assembly of long and short reads
MetaCarvel: A scaffolder for metagenomes
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Master Algorithmic Programming Techniques. Learn algorithms through programming and advance your software engineering or data science career
SPAdes Genome Assembler
Ultra-fast and memory-efficient (meta-)genome assembler
Signal-level algorithms for MinION data
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