SPAdes Genome Assembler
-
Updated
May 24, 2024 - C++
SPAdes Genome Assembler
Linear-time de novo Long Read Assembler
Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly
Ultra-fast and memory-efficient (meta-)genome assembler
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Micro genome assembler. Uses BWT for seeding/pattern matching and a greedy score based aligner.
Signal-level algorithms for MinION data
MetaCarvel: A scaffolder for metagenomes
Assembling Genome of phi x 174 from random reads using various techniques.
Master Algorithmic Programming Techniques. Learn algorithms through programming and advance your software engineering or data science career
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
GPU implementation of Abyss: A parallel assembler for short read sequence data
A fast tool for hybrid genome assembly of long and short reads
this is repo about my solutions of problems in Data Structures and Algorithms Specialization in coursera site from algorithmic toolbox to Genome Assembly Programming Challenge
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
Fast and memory-efficient noisy read overlapping with KD-trees
An efficient approach for constructing de-bruijn graph for genome assembly
Add a description, image, and links to the genome-assembly topic page so that developers can more easily learn about it.
To associate your repository with the genome-assembly topic, visit your repo's landing page and select "manage topics."