[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
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Updated
Apr 30, 2024 - Shell
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
Workflow for Building Microsynteny Networks
Components of genome sequence assembly tools
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
DEPRECATED: Use Cenote-Taker 3 instead
SARS-CoV-2 Genome Assembler
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
🐳 Apollo 2.X Docker Image
I'm sharing my automation of the 3D_DNA and SALSA Hi-C scaffolding pipelines.
Library-free horizontal transfer detection, with a focus on transposable element invasions
Methods for genome paper
Teaching Material for Course "Computational Bioscience & Machine Learning 2021 - Genome Assembly"
bash shell utilities for analyzing csv files and writing the slurm and pbs applications.
Scripts to index and align Bovine genome with HISAT2
Aphrocallistes vastus genome
Genomics Part of the KAUST High Throughput Sequencing Workshop 2019
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