Genomic data manipulation tool
-
Updated
Jun 5, 2024 - Python
Genomic data manipulation tool
Personal Website with Blogposts, Achievements and Ideas
Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermitteln.
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
Official code repository for GATK versions 4 and up
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Mitochondrial Long-read Iterative Assembly
Genome identification tool for Double-strand Break Repair
Library-free horizontal transfer detection, with a focus on transposable element invasions
Evaluating genome assemblies
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
A Nextflow workflow to generate lift over files for any pair of genomes
sra cloner and interacts with the nucleotide sra and allows for multiple sra fetcher
Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Add a description, image, and links to the genome topic page so that developers can more easily learn about it.
To associate your repository with the genome topic, visit your repo's landing page and select "manage topics."