This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.

Bio-Wrangler is a Python package for bioinformatics data wrangling. It helps load, filter, merge, and summarize bioinformatics datasets from formats like FASTA, FASTQ, VCF, and GFF.

A pipeline for reporting information on G-quadruplexes relative to coding regions and non-aligned regions.

Modify the gff export from Apollo, changing Name to ID.

Lift annotations from a GTF file to an adata object.

A python code to display Player Character (PC) items from a NWN BIC file, to a CSV file. This is meant to be used with ThreeTowns server items (custom 2da files)

LinkML schema for GFF3, the Genome Feature Format

Predicting Transcription Factor Binding Sites from ENCODE data using Machine Learning

💻 Interconverting FASTA, GFF, and CSV.

analyzer for phytozome gff files and pacid for genes.

📦 A Command Line Tool for downloading protein structures, sequences and MSAs

ease of access gff files from tair for reading tair ids.

Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.

home-made scripts to manipulate sequence annotation file formats (gff / vcf / genbank)

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. AgroLD ETL is the Python packages developed to transform plant datasets in RDF. Packages are developped for data standards such as GFF,GAF, VCF and specific plant databases.

CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.

Semantically Interoperable Genome Annotations