hla-typing
Here are 27 public repositories matching this topic...
R package specialized in HLA typing clustering and visualization based on specific similarity metrics.
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Oct 11, 2022 - R
HLA benchmark study using polysolverMod on 1000 genome data
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Aug 29, 2024 - Python
Data portal and API for Center for Viral Systems Biology (CViSB) data
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Jan 13, 2023 - TypeScript
HLAXPress performs estimation of allele-specific expression levels for HLA genes using UMIs.
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Sep 11, 2020 - R
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Feb 17, 2022 - HTML
A Nextflow workflow for HLA typing using HLA-HD
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Jul 3, 2024 - Nextflow
polysolver-mod: Modern style HLA typing for class I and II alleles
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Sep 11, 2024 - Shell
wrapper workflow for BCGSC tool HLAminer
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Jun 28, 2024 - WDL
Docker image for arcasHLA software
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Jan 27, 2020 - Dockerfile
hla-typing by optitype & polysolver , detect loh by lohhla.
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Mar 28, 2024 - R
A script to run HLA typing tools from next generation sequencing data
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Jan 4, 2023 - Python
workflow wraps HLA-VBSeq, a tool for estimating the most prevalent HLA types in a sample
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Jun 28, 2024 - WDL
An HLA star-calling tool for PacBio HiFi data types
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Apr 11, 2024
RNA2HLA is a QC tool performing study-wide HLA typing for RNA-seq data (paired on single-end) and thereby identifying the samples from the common source.
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Mar 9, 2023 - Python
Python package for doing fast and accurate sequence annotation
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May 22, 2023 - Python
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