Unique sequence search by K-mer exclusion

Mutation table of COVID-19 virus genome with all possible substitution mutations and corresponding 20-mers for mutation identification

Shared k-mer content between two genomes

A method for creating a dictionary of all k-mer abundances within a fasta file along with their corresponding Godel numbers.

Files from DIMACS 2007 DNA barcoding challenge

🧹 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets

Enumerate k-mers of a given string.

K-mer spectrum corrector based on Hadoop

This repository contains the results and comparison visualization of circRNA candidates detected by circRNA prediction softwares.

A simple python script that counts k-mer matches between reference database and query .fasta files, optionally returning all non-matching query sequences. Designed originally for sequencing adapter decontamination.

Predicts anticancer peptides using random forests trained on the n-gram encoded peptides. The implemented algorithm can be accessed from both the command line and shiny-based GUI.

A fork of the original https://github.com/medvedevgroup/UST tool.

Reference-free FASTQ filter for rare germline and somatic variants

A java program which identifies and sums all n-grams/shingles/l-mer/k-mer of contiguus size n in a text document, then outputs the results to a file

A PHP hash table optimized for counting short gene sequences for use in Bioinformatics.

K-mer indexing and querying in RNA-Seq data

Assembles a genome and finds true mutations among sequencing errors

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

Blazingly fast SRA-scale sequence analysis & QC

A read classification tool based on Interleaved Bloom Filters