Rapid comparison and dereplication of genomes
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Updated
Mar 11, 2024 - Python
Rapid comparison and dereplication of genomes
Build a partitioned pangenome graph from microbial genomes
creating hybrid-gene phylogenetic trees for diversity analyses
A genome visualization python package for comparative genomics
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
SPIRO is a Smart Plate Imaging Robot
A library for analyzing time-series of dividing micro-organisms
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
Rapid determination of appropriate reference genomes.
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Repository accompanying the paper "Flow cytometric single-cell identification of populations in synthetic bacterial communities".
hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
MGKit: Metagenomics Framework
Run several analysis on bacterial genomes
Mobile Genetic Elements Coordinates Extractor
Examination of microbial diversity patterns
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