Benchmarking common tasks on proteins in various languages and packages

📦 A Command Line Tool for downloading protein structures, sequences and MSAs

Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.

Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.

Benchmarks for reading and interpreting mmCIF files

Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation

Encode information from a HADDOCK run to a cif file to be deposited in PDB-Dev.

Program to add sequences and data collection statistics to mmCIF files for PDB deposition

Fixes mmCIF protein structure files

Convert in batch CIF files to PDB

Extract chains' and polypeptides' sequences from PDB or mmCIF files.