Brain Modeling Toolkit

A Blender add-on to bring animations from NEURON

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Biologically detailed neural network simulations and analysis API

Python library to interface with CATMAID servers. Fully interoperable with navis.

A virtual optogenetics laboratory

The memristive schematic implementation for spinal cord segment

This is a repository with implementations of neuron models, synapses, and spiking neural networks (SNN). It's still in development and it has original content in terms of code.

pydentate is a biophysically realistic computational model of the dentate gyrus, a hippocampal brain region associated with memory formation and a computation called pattern separation.

Ring network model test to demonstrate the use of CoreNEURON

Blue Brain Python Electrical Modeling Pipeline

A collection of scripts to assist with developing networks in BMTK (https://github.com/AllenInstitute/bmtk)

SanPy is software for whole-cell current clamp analysis.

Generalisation of electrical models of neurons with MCMC

A repository for co-ordinating work on ontologies for the Brain Data Standards Project

A Python package that allows Arbor-like descriptions of cell models for NEURON.

Neuron geometry library for swc format.

Frequency-dependent pattern separation in a biophysical model of the dentate gyrus, (Singh et al., 2023)

Flappy Bird built using PyGame in which the user has the opportunity to compete with an AI.

PyNeval, a toolbox for quantative analysis on neuron reconstruction result.